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import argparse
import json
import numpy as np
import os
import torch
import urllib.request
from ast import literal_eval
from typing import Dict, List
from urllib.parse import urlparse
from gds import benchmark_datasets
from gds import get_dataset
from gds.datasets.wilds_dataset import GDSDataset, GDSSubset
"""
Evaluate predictions for WILDS datasets.
Usage:
python examples/evaluate.py <Path to directory with predictions> <Path to output directory>
python examples/evaluate.py <Path to directory with predictions> <Path to output directory> --dataset <A WILDS dataset>
"""
def evaluate_all_benchmarks(predictions_dir: str, output_dir: str, root_dir: str):
"""
Evaluate predictions for all the WILDS benchmarks.
Parameters:
predictions_dir (str): Path to the directory with predictions. Can be a URL
output_dir (str): Output directory
root_dir (str): The directory where datasets can be found
"""
all_results: Dict[str, Dict[str, Dict[str, float]]] = dict()
for dataset in benchmark_datasets:
try:
all_results[dataset] = evaluate_benchmark(
dataset, os.path.join(predictions_dir, dataset), output_dir, root_dir
)
except Exception as e:
print(f"Could not evaluate predictions for {dataset}:\n{str(e)}")
# Write out aggregated results to output file
print(f"Writing complete results to {output_dir}...")
with open(os.path.join(output_dir, "all_results.json"), "w") as f:
json.dump(all_results, f, indent=4)
def evaluate_benchmark(
dataset_name: str, predictions_dir: str, output_dir: str, root_dir: str
) -> Dict[str, Dict[str, float]]:
"""
Evaluate across multiple replicates for a single benchmark.
Parameters:
dataset_name (str): Name of the dataset. See datasets.py for the complete list of datasets.
predictions_dir (str): Path to the directory with predictions. Can be a URL.
output_dir (str): Output directory
root_dir (str): The directory where datasets can be found
Returns:
Metrics as a dictionary with metrics as the keys and metric values as the values
"""
def get_replicates(dataset_name: str) -> List[str]:
if dataset_name == "poverty":
return [f"fold-{fold}" for fold in ["A", "B", "C", "D", "E"]]
else:
if dataset_name == "camelyon17":
seeds = range(0, 10)
elif dataset_name == "civilcomments":
seeds = range(0, 5)
else:
seeds = range(0, 3)
return [f"seed-{seed}" for seed in seeds]
def get_prediction_file(
predictions_dir: str, dataset_name: str, split: str, replicate: str
) -> str:
run_id = f"{dataset_name}_split-{split}_{replicate}"
for file in os.listdir(predictions_dir):
if file.startswith(run_id) and (
file.endswith(".csv") or file.endswith(".pth")
):
return file
raise FileNotFoundError(
f"Could not find CSV or pth prediction file that starts with {run_id}."
)
# Dataset will only be downloaded if it does not exist
wilds_dataset: GDSDataset = get_dataset(
dataset=dataset_name, root_dir=root_dir, download=True
)
splits: List[str] = list(wilds_dataset.split_dict.keys())
if "train" in splits:
splits.remove("train")
replicates_results: Dict[str, Dict[str, List[float]]] = dict()
replicates: List[str] = get_replicates(dataset_name)
metrics: List[str] = get_metrics(dataset_name)
# Store the results for each replicate
for split in splits:
replicates_results[split] = {}
for metric in metrics:
replicates_results[split][metric] = []
for replicate in replicates:
predictions_file = get_prediction_file(
predictions_dir, dataset_name, split, replicate
)
print(
f"Processing split={split}, replicate={replicate}, predictions_file={predictions_file}..."
)
full_path = os.path.join(predictions_dir, predictions_file)
# GlobalWheat's predictions are a list of dictionaries, so it has to be handled separately
if dataset_name == "globalwheat":
metric_results: Dict[str, float] = evaluate_replicate_for_globalwheat(
wilds_dataset, split, full_path
)
else:
predicted_labels: torch.Tensor = get_predictions(full_path)
metric_results = evaluate_replicate(
wilds_dataset, split, predicted_labels
)
for metric in metrics:
replicates_results[split][metric].append(metric_results[metric])
aggregated_results: Dict[str, Dict[str, float]] = dict()
# Aggregate results of replicates
for split in splits:
aggregated_results[split] = {}
for metric in metrics:
replicates_metric_values: List[float] = replicates_results[split][metric]
aggregated_results[split][f"{metric}_std"] = np.std(
replicates_metric_values, ddof=1
)
aggregated_results[split][metric] = np.mean(replicates_metric_values)
# Write out aggregated results to output file
print(f"Writing aggregated results for {dataset_name} to {output_dir}...")
with open(os.path.join(output_dir, f"{dataset_name}_results.json"), "w") as f:
json.dump(aggregated_results, f, indent=4)
return aggregated_results
def evaluate_replicate(
dataset: GDSDataset, split: str, predicted_labels: torch.Tensor
) -> Dict[str, float]:
"""
Evaluate the given predictions and return the appropriate metrics.
Parameters:
dataset (GDSDataset): A WILDS Dataset
split (str): split we are evaluating on
predicted_labels (torch.Tensor): Predictions
Returns:
Metrics as a dictionary with metrics as the keys and metric values as the values
"""
# Dataset will only be downloaded if it does not exist
subset: GDSSubset = dataset.get_subset(split)
metadata: torch.Tensor = subset.metadata_array
true_labels = subset.y_array
if predicted_labels.shape != true_labels.shape:
predicted_labels.unsqueeze_(-1)
return dataset.eval(predicted_labels, true_labels, metadata)[0]
def evaluate_replicate_for_globalwheat(
dataset: GDSDataset, split: str, path_to_predictions: str
) -> Dict[str, float]:
predicted_labels = torch.load(path_to_predictions)
subset: GDSSubset = dataset.get_subset(split)
metadata: torch.Tensor = subset.metadata_array
true_labels = [subset.dataset.y_array[idx] for idx in subset.indices]
return dataset.eval(predicted_labels, true_labels, metadata)[0]
def get_predictions(path: str) -> torch.Tensor:
"""
Extract out the predictions from the file at path.
Parameters:
path (str): Path to the file that has the predicted labels. Can be a URL.
Return:
Tensor representing predictions
"""
if is_path_url(path):
data = urllib.request.urlopen(path)
else:
file = open(path, mode="r")
data = file.readlines()
file.close()
predicted_labels = [literal_eval(line.rstrip()) for line in data if line.rstrip()]
return torch.from_numpy(np.array(predicted_labels))
def is_path_url(path: str) -> bool:
"""
Returns True if the path is a URL.
"""
try:
result = urlparse(path)
return all([result.scheme, result.netloc, result.path])
except:
return False
def main():
if args.dataset:
evaluate_benchmark(
args.dataset, args.predictions_dir, args.output_dir, args.root_dir
)
else:
print("A dataset was not specified. Evaluating for all WILDS datasets...")
evaluate_all_benchmarks(args.predictions_dir, args.output_dir, args.root_dir)
print("\nDone.")
if __name__ == "__main__":
parser = argparse.ArgumentParser(
description="Evaluate predictions for WILDS datasets."
)
parser.add_argument(
"predictions_dir",
type=str,
help="Path to prediction CSV or pth files.",
)
parser.add_argument(
"output_dir",
type=str,
help="Path to output directory.",
)
parser.add_argument(
"--dataset",
type=str,
choices=benchmark_datasets,
help="WILDS dataset to evaluate for.",
)
parser.add_argument(
"--root-dir",
type=str,
default="data",
help="The directory where the datasets can be found (or should be downloaded to, if they do not exist).",
)
# Parse args and run this script
args = parser.parse_args()
main()
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